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GRID computing

Methods IPH, Günther

GRID computing Model: SunFire X2250, Dell PE 1950, BL460c HP, Grid
Unit and Room: Rechenzentrum of the university
Responsible: Dr. Volker-H. Winterer, Rechenzentrum
Parallel data processing Further information: http://www.bfg.uni-freiburg.de

Short Description:

The Black-Forest Grid is currently constituted of 760 Cores and 2GB RAM per Core.

Picture of the Equipment

Grid Computing 

Available Experiments/Techniques:

Ligand-based / structure-based compound screenings
High throughput docking of compounds
Molecular dynamics simulations of molecular interactions
Prediction of binding affinities

Special Equipment:

Software, Molecular Modeling Platforms:
Schrodinger, Inc. software suite
Accelrys, Inc. software suite

Measurements on the equipment are currently done by: Students after introduction
Students after extensive training
Trained scientific service personal
 
Recent Publications, where this instrument was
important (citation):

 
Typical problems that may be solved with this instrument: Identification of small molecules that come into question for drug leads. Prediction of binding affinities.

 

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